Mediterranean Institute of Oceanology https://www.mio.osupytheas.fr/en Tue, 17 Dec 2024 12:19:49 +0000 en-GB hourly 1 https://wordpress.org/?v=6.7.1 https://www.mio.osupytheas.fr/wp-content/uploads/2024/02/favicon-32x32-1.png Mediterranean Institute of Oceanology https://www.mio.osupytheas.fr/en 32 32 Flora Drouet will defend her thesis on Tuesday 17 December 2024 at 14:30 in the Amphithéâtre W300 on the La Garde Campus. https://www.mio.osupytheas.fr/en/flora-drouet-will-present-her-thesis-on-tuesday-17-december-2024-at-1400-at-the-w300-theatre-on-the-la-garde-campus/ Tue, 17 Dec 2024 12:10:24 +0000 https://www.mio.osupytheas.fr/?p=16576

Flora Drouet will present her thesis on Tuesday 17 December 2024 à 14h30 at the W300 Amphitheatre on the La Garde Campus.

On the following subject: Trophic organisation and ecological functioning of the Functional Types of Plankton: application to THg transfers in the planktonic continuum of two coupled coastal ecosystems, differently impacted by anthropogenic activities (Bay of Toulon, north-western Mediterranean, France)..

Flora Drouet

Composition of the Jury

Ms CHARMASSON Sabine, Research Executive, IRSN - Rapporteur
Mr STEMMANN Lars, Professor, LOV, Sorbonne University - Rapporteur
Ms MAZZOCCHI Maria Grazia, Senior Scientist, Stazione Zoologica Anton Dohrn - Examiner
Mr Debroas Didier, Professor, LMGE, Université Clermont Auvergne - Examiner
Mr KNOERY Joël, Research Executive, CCEM, Ifremer - Examiner
Ms JAMET Dominique, Senior Lecturer, MIO, University of Toulon - Co-supervisor
Mr BRACH-PAPA Christophe, Research Executive, LERPAC, Ifremer - Co-supervisor
Mr JAMET Jean-Louis, Professor, MIO, University of Toulon - Thesis supervisor

Summary

It is essential to characterise the planktonic compartment in its entirety in order to understand its organisation, how it functions and its influence on the trophic transfer of contaminants. This study was carried out in the Bay of Toulon, a model of anthropised ecosystems, and was based on two distinct approaches carried out in parallel. The first involved characterising the structure and dynamics of the planktonic continuum. The second studied its trophic organisation and its influence on THg transfers. The originality of this study lies in the detailed taxonomic characterisation of the planktonic material collected by horizontal net lines and separated into size classes. The use of PFTs enabled us to propose a functional organisation of the planktonic compartment and to gain a better understanding of the mechanisms involved in Hg transfers. The integration of THg into planktonic food webs was mainly due to adsorption phenomena at the surface of the smallest fractions made up of phytoplankton PFTs; whereas for the largest fractions, made up of zooplankton PFTs, Hg transfers seemed to depend more on trophic relationships and feeding strategies specific to the PFTs.

 

Live on Youtube!

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Antoine Ricouard, ATER at the MIO, will defend his thesis on Wednesday 18 December 2024 at 2pm at the Ifremer station in Sète. https://www.mio.osupytheas.fr/en/antoine-ricouard-ater-with-the-mio-will-present-his-thesis-on-wednesday-18-december-2024-at-2pm-at-the-ifremer-station-in-sete/ Mon, 16 Dec 2024 19:00:17 +0000 https://www.mio.osupytheas.fr/?p=17740 On the following subject: Sustainable management benchmarks put to the test in complex fisheries: application to the mixed demersal fishery in the Bay of Biscay

This thesis was prepared at UMR MARBEC

Video conference link

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Congratulations to Amélie Hoste, who defended her thesis on Monday 16 December 2024. https://www.mio.osupytheas.fr/en/defence-of-thesis-amelie-hoste/ Mon, 16 Dec 2024 17:12:42 +0000 https://www.mio.osupytheas.fr/?p=17046

On the following subject: Growth of European eels in Mediterranean lagoons Inter-habitat comparison of demography, habitat use tactics and the condition of future spawners".

 

Amélie Hoste

 

Composition of the jury

Anthony ACOU Research engineer Museum national d'histoire naturelle MNHN CRESCO Dinard - Examiner

Hervé CAPRA INRAE Research Director - Examiner

Audrey DARNAUDE CNRS Research Fellow UMR Marbec - Examiner

Caroline DURIF Senior Research scientist Institute of Marine Research Austevoll Research - Rapporteur

Delphine NICOLAS Tour du Valat research officer - Thesis co-supervisor

Etienne PREVOST INRAE Research Director - Rapporteur

Jean-christophe POGGIALE University Professor AMU MIO - Thesis supervisor

 

Summary

The European eel (Anguilla anguilla) is a panmictic species with a complex life cycle, reproducing in sea and growing in continental waters, over a vast area stretching from the coasts of North Africa to northern Europe. Like other diadromous migratory fish, it faces multiple threats. Since the 1980s, its recruitment has fallen by more than 95 %. Classified as critically endangered, the eel has benefited since 2007 from a European regulation aimed at rebuilding its stock, with measures focused in particular on increasing the number of silver eels, future breeders. A better understanding of the growth of eels during their continental phase is crucial, as it is at this stage that effective management measures can be applied. During this phase, eels can colonise a wide variety of habitats, both within and between individuals, illustrating their remarkable phenotypic plasticity. Eel life-history traits vary according to environmental conditions. General trends show that eels grow faster in the south of their range, and in brackish environments compared with freshwater. Most studies on eel growth have focused on freshwater, brackish or marine environments on the Atlantic coast, leaving Mediterranean ecosystems largely under-studied. Mediterranean lagoon environments, which favour rapid eel growth and have a high potential for the production of future spawners, are thought to play a key role in the recovery of the world stock. Within these environments, the diversity of habitats present, ranging from oligohaline to hyperhaline, contributes to the expression of great variability in the life history traits of the eel. This thesis explores eel growth within a Mediterranean lagoon complex, the Rhône delta (France), by studying the influence of habitat type on silver eel production, in terms of both quantity and quality, and by examining the habitat use tactics of eels during growth. This work was based on a variety of methods, including modelling, schlerochronology, microchemical quantification, and ecotoxicological and epidemiological analyses. This multidisciplinary approach has shown the existence of distinct sub-populations in terms of abundance, sex ratio and life history traits, with high variability between and within the sites studied. The Vaccarès lagoon, a mesohaline to euhaline lagoon, appears to offer the best conditions for the production of silver eels, with good body condition, a high growth rate, an early age at silvering and significant abundance in favour of males. In contrast, eels from the Fumemorte freshwater channel show the lowest growth rates and abundances, with a sex ratio favouring females, but high survival rates. Habitat diversity in the Camargue lagoon complex appears to be essential for maintaining the variability of eel life-history traits. Some habitats that are suitable for eel growth are heavily polluted, leading to contamination of individuals, and underlines the urgent need to improve water quality. The knowledge acquired provides a baseline from which to consider actions aimed at improving the production of eels in good body condition and health, while taking account of the specific characteristics of each type of habitat.
Le Monday 16 December at 2pm to the Tour du Valatin the Jean-Paul Taris room (large room).
 
A zoom link is also available: https://us06web.zoom.us/j/81634756118
 
 
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JEAI EXTREM BIODIV VALOR explores the microbial biodiversity of Moroccan thermal springs and coastal salt flats https://www.mio.osupytheas.fr/en/exploration-of-the-microbial-biodiversity-of-moroccan-thermal-springs-and-coastal-salines-by-jeai-extrem-biodiv-valor/ Sat, 14 Dec 2024 21:08:35 +0000 https://www.mio.osupytheas.fr/?p=18156

The IRD's Young Associated Team - JEAI EXTREM BIODIV VALOR (MIO, MASCIR/UM6P and UCA) - met in Morocco from 1 at 7 December 2024 on the Mediterranean and Atlantic coasts for a mission to sample water and sediments from extreme Moroccan coastal ecosystems (thermal springs and saltworks at Nador and Oualidia).
Extremophilic microorganisms (bacteria, archaea and microalgae) will be analysed, identified and cultivated in the partner laboratories to study their biodiversity and assess their biotechnological potential in the fields of health and the environment.

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HOPE-05: 5th HOPE mission aboard the N/O Antea - News from Nouméa https://www.mio.osupytheas.fr/en/hope-05-5th-hope-mission-aboard-the-n-o-antea-news-from-noumea/ Fri, 13 Dec 2024 18:34:18 +0000 https://www.mio.osupytheas.fr/?p=17563

The project HOPE continues to move forward with the 5th mission of 2024, carried out in November off the coast of New Caledonia.

During this mission, the team relieved, refitted and re-deployed the EXPORT-LINE, a 700 m long line anchored from the ocean floor to the surface. Instrumented with 32 sensors and collectors, it samples the marine snow at strategic depths every 2 days to quantify the carbon captured and understand the environmental conditions influencing this process. The operation was a success.

Anchored in the South Pacific since March 2024, the EXPORT-LINE, which is surveyed every three months, is a delicate operation carried out by a team of 9 researchers and engineers, as well as 13 sailors aboard the FOF M/O Antea. This series of campaigns is part of the ERC HOPE project on the role of diazotrophs in the biological carbon pump.

The EXPORT-LINE works in tandem with the HOPE'ORTUNITY intelligent buoy, which is equipped with automated systems that measure the physical and biological parameters of the surface ocean (0-100 m) every 4 hours, in particular the biodiversity of the plankton responsible for carbon sequestration.

The next 16-day mission will take place in February 2025, to survey the EXPORT-LINE and study very high-frequency processes at the HOPE'ORTUNITY buoy with our American and Pacific colleagues.

Photo credit: S. Bonnet
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End of the HOPE-06 mission aboard the Antéa off Nouméa https://www.mio.osupytheas.fr/en/end-of-hope-06-mission-off-noumea-aboard-lantea/ Fri, 13 Dec 2024 18:29:19 +0000 https://www.mio.osupytheas.fr/?p=17628

A 10-day mission from 12 at 21 November 2024during which we criss-crossed the area, combining physical and biogeochemical measurements to gain a better understanding of the carbon pump. It was an intense and lively mission, during which we braved the difficulties and saw a live bloom of Trichodesmium, all the while being thoroughly shaken up!

MIO participants on board Anne Petrenko, Jean-Luc Fuda, Mathieu Gentil (postdoc HOPE-VV), Matthieu Savarino (PhD student HOPE), Ambroise Délisée (PhD student HOPE/HOPE-VV), Marion Fourquez (postdoc HOPE), Stéphanie Barrillon (project leader) and our colleagues Emmanuel Laurenceau-Cornec (LEMAR), Céline Bachelier (IMAGO).

On land Sophie Bonnet, Mercedes Camps, Jordan Duchene, Louise Rousselet

HOPE-6 The group
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Congratulations to Natacha Bourg, who defended her thesis on Friday 13 December 2024. https://www.mio.osupytheas.fr/en/thesis-defence-natacha-bourg/ Fri, 13 Dec 2024 14:14:11 +0000 https://www.mio.osupytheas.fr/?p=16872

On the following subject: Interactions between boundary currents, fronts and eddies in the Northern Current and the East Australian Current. Transport dynamics and application to the journey of Physalia spp.

 

 

Composition of the Jury

Rapporteurs Bruno Blanke (LOPS, Brest France), Clothilde Langlais (CSIRO, Hobart Australia)

Examiners Luis Ferrer (AZTI, Pasaia Spain), Daniel Conley (UoP, Plymouth UK)

Directors Anne Molcard, Amandine Schaeffer (UNSW, Sydney Australia)

Summary

Edge currents, characterised by high speeds and numerous dynamic interactions with continental margins, are the main drivers of oceanic variability in the coastal regions they cross. The first part of this thesis focuses on High Frequency RADAR observations of the North Current in the North-Western Mediterranean and the East Australian Current in the South Pacific Ocean. We study the seasonal and interannual variability of the current and the development of mesoscale eddies in the North Current system. In particular, we are examining the separation dynamics of the East Australian Current, its frontal characteristics and its impact on surface chlorophyll-a concentration. Because of their large extent and position along the continental shelf, the edge currents are important because they act both as barriers and as transport belts for passive matter. The second part focuses on Physalia spp, a pseudopassive stinging organism floating on the ocean surface that regularly reaches the Australian coast. We were able to estimate the relative impact of meteorological and marine variables on their stranding. Based on laboratory experiments, we are establishing a parameterisation for the drift of 3D models of Physalia spp. induced by the wind. This result, integrated into a Lagrangian tracking model based on scenarios typical of the East Australian Current, enables us to determine the cumulative influence of wind and current on the trajectories of the Physalia The results presented in this thesis contribute to our knowledge of two onboard currents, characterised by different scales and modes of variability, and illustrate their role in the transport of passive matter through the study of the drift of Physalia spp.

 

Key words

Edge currents, Fronts, Eddies, High-frequency RADAR, Chlorophyll-a, Transport, Physalia spp, Canal à Houle.
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Congratulations to Quentin Charras who defended his thesis on Friday 13 December. https://www.mio.osupytheas.fr/en/thesis-defense-quentin-charras-biogeochemistry/ Fri, 13 Dec 2024 14:13:28 +0000 https://www.mio.osupytheas.fr/?p=17338

On the following subject: Ecophotobiology of the seagrass Posidonia oceanica: Exploring the ecological and evolutive dimension of photosynthetic adaptation mechanisms in-situ.

 

Quentin Charras

 

Composition of the jury

Mr Youri TIMSIT Mediterranean Institute of Oceanography (MIO) Thesis supervisor.
Ms Colette JUNGAS, BIAM, CEA Thesis co-supervisor.
Ms Anja KRIEGER-LISZKAY, Institute for Integrative Biology of the Cell, Université Paris-Saclay, Rapporteur.
Mr Giovanni FINAZZI, Interdisciplinary Research Institute of Grenoble, IRIG-LPCV, CNRS Rapporteur.
Mr Benjamin BAILLEUL, Institut de Biologie Physico-Chimique (IBPC), CNRS Examiner.
Ms Marina SIPONEN BIAM, CNRS Examiner.
Ms Heike MOLENAAR Université Côte d'Azur Examiner
Mr Rainer HIENERWADEL, BIAM, Aix Marseille University, Chairman of the jury

 

Abstract

In a context of global environmental changes, predicting the resilience and trajectories of natural plant population changes is of primordial importance. Vegetated ecosystems are at the basis of very rich and diversified networks. They are amongst the most important sources of the molecular oxygen we breathe and are considered as major carbon sinks contributing to buffering of anthropic greenhouse gas production. In the need of their conservation, the comprehension of the physiology of wild plant species is therefore necessary to predict the way they will respond to the actual anthropic crisis. In the framework of this PhD project, we focused on the photobiology of seagrass meadows formed by Posidonia oceanica, a species endemic from the medietarrenean sea. This plant flourishes from the surface up to 45m depth and is fascinating for many reasons. Not only does it engineer a rich ecosystem that provides goods and services for millions of people but it also flourishes under contrasted light irradiances, depending on the growing depth, a feature unique to the marine environment. Indeed, P. oceanica has to adapt to optimise its photosynthesis under irradiance similar to that of the land environment in shallow water but also under an irradiance that can be 50 times less intense than at the surface and on top of that, only composed of blue light in deep water.
The initial aim of this project was therefore to unveil some of the key photosynthetic adaptation mechanisms expressed by P. oceanica to cope with the unique light environment in the sea. However, underwater, not only light influences the biology of plants but also many biotic and abiotic factors such as temperature, salinity, CO2 limitation or competition. This is important since we came up against many biochemical locks that prevented the correct analysis of the photosynthetic apparatus through conventional biochemical approaches. Very early, we consequently investigated the plant cell wall composition and the impact of polyphenols on the process of photosystems isolation. Therefore, in this project we present our results on the photosynthesis of P. oceanica but we also improved knowledge on the plant cell wall, carbon allocation and polyphenol localization and composition in this plant.

The analysis of the plant cell wall and photoassimilates highlighted that one of the key strategies of P. oceanica to insure its success in deep water was the ability to store a large part of the fixed carbon in the below ground tissues as compared to shallow plants. Such studies raise questions about the different strategies of carbon allocation that respond to constraints specific to the shallow and deep meadows.

While we were trying to extract the photosynthetic membranes from P. oceanica, we noticed that the final preparation turned brown and that thylakoids appeared trapped in a mucilaginous mass. If we first blamed the cell wall components, we rapidly suspected that polyphenols prevented the extraction of thylakoids and photosynthetic complexes. We managed to alleviate these issues by using Poly Ethylene Glycol (PEG) and vitamin C (ascorbic acid), which inhibit the harmful effect of polyphenols. We extended our protocol to other wild plants such as Q. pubescens (oak) and V. vinifera (Wine), known to be refractory to the conventional extraction procedure.

The technical lock being opened, we then focused on the adaptive mechanisms of photosynthesis regulation implemented by P. oceanica to cope with the constraints of the marine light environment. In that aim, we selected meadows exposed to high irradiance (2 m depth), meadows that grew under an irradiance similar to the one used for lab grown model but only composed of cyan-blue light (15 m depth) and finally meadows that grow under low and blue-cyan light irradiance (26 m depth). By integrating electron microscopic observation of chloroplasts and biochemical approaches coupled with functional analyses, we highlight that despite drastic change in the thylakoids organization, the PSs stoichiometry, LHCII content and the respective antenna size remain fewly changed through depth. However, P. oceanica is distinguished from land plants by a higher PSI/PSII stoichiometry and higher LHCII content. Furthermore, analysis of photosystem supercomplexes by Blue-native gels revealed the presence of a blue-shifted Large-PSI-LHCII complex in addition to the classical PSI (PSI-LHCI), which is also blue shifted. The Large-PSI-LHCII complex was characterized by an extra Lhca1-Lhca4 dimer and accumulated at all tested depths. We expanded our analysis to other seagrasses that differed in their bathymetric distribution. All together, our results highlight that shallow and deep growing seagrasses differ in terms of photosynthetic strategies ensuring their ecological success in specific ecological niches.

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Congratulations to Alix Limoges, who defended her thesis on Friday 13 December 2024. https://www.mio.osupytheas.fr/en/defence-of-thesis-alix-limoges/ Fri, 13 Dec 2024 14:13:18 +0000 https://www.mio.osupytheas.fr/?p=16881

On the following subject: High Resolution Modelling of Aerosol Dynamics in the Mediterranean Coastal Zone.

 

Alix Limoges

 

Composition of the Jury

Rapporteurs
Marie-Noelle Bouin - (CNRM -Météo-France)
Umberto Rizza (CNR ISAC)

Examiners
Marc Mallet (CNRM)
Malik Chami (Sorbonne University)
Alexander Van Eijk (TNO)

Directors
Jacques Piazzola - University Professor (University of Toulon - Mediterranean Institute of Oceanography)
Pierre Sagaut - University Professor (Aix-Marseille University - M2P2)

Summary

Marine aerosols, generated by wind-wave interaction processes, are a major component of natural aerosols and play an important role in the planet's radiation balance. For this reason, a better understanding of the properties and atmospheric dynamics of these particles is a major challenge in the context of climate change, but also in terms of their interactions with atmospheric pollutants and the transport of large quantities of organic matter, which will have an impact on air quality, particularly in coastal regions. This thesis work was devoted to the development of a detailed model of the atmospheric dynamics of these aerosols in coastal areas, with the aim of gaining a better understanding of the intrusion and local atmospheric variations of marine aerosol concentrations in these spatially limited areas. To do this, an LES version of the MESO-NH model, in which a specific formulation of the marine aerosol source function developed in the MIO laboratory was introduced, was implemented over the Toulon coastal region. The numerical simulations were compared with experimental data acquired on board the ship Atalante during the MIRAMER research campaign. The ability of the numerical model to predict variations in aerosol concentration as a function of different local wind directions was assessed. The results provided a better understanding of the impact of the geographical configuration of the coastline on aerosol dynamics, and demonstrated the contribution and limitations of the high-resolution modelling used. The latter relate in particular to the limitations of the meteorological model in rendering localised turbulent structures, which need to be better described for accurate aerosol modelling, particularly in the land-sea transition zone. This work has also made it possible to improve the source function of aerosols from wave breaking for short fetches thanks to specific work on the wave slope.

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Congratulations to Pauline Martinot, who defended her thesis on Friday 13 December 2024. https://www.mio.osupytheas.fr/en/pauline-martinot-will-present-her-thesis-on-friday-13-december-2024-at-9-30-am-in-lamphi-ocenomed/ Fri, 13 Dec 2024 13:30:33 +0000 https://www.mio.osupytheas.fr/?p=17056 On the following subject: Distribution and reactivity of dissolved Black Carbon in coastal environments: Application to the Bay of Marseille (France) and the Red River Delta - Gulf of Tonkin (Vietnam).

 

Composition of the jury

  • Emma ROCHELLE-NEWALL, Rapporteur, Research Director, IRD
  • Arnaud HUGUET, Rapporteur, Research Director, CNRS
  • Melika BAKLOUTI, Examiner, Chair of the jury, Professor, AMU
  • Eva ORTEGA-RETUERTA, Examiner, Research Fellow, CNRS
  • Xavier MARI, Thesis Director, Director of Research, IRD
  • Marc TEDETTI, Thesis co-supervisor, Research Director, IRD
  • Cam Tu VU, Guest Lecturer, USTH
 

Summary

"The aim of this thesis was to gain a better understanding of the distribution, fluxes and biological and chemical reactivity of dissolved black carbon (DBC) in relation to dissolved organic matter (DOM) in coastal environments. Field campaigns were carried out in the Bay of Marseille (1 campaign), the Van Uc estuary (2 campaigns) and the main branch of the Red River delta in Vietnam (3 campaigns). In the laboratory, the optical properties of DOM_BC solutions were compared with those of marine and terrestrial DOM. The biological and chemical reactivities of DOM_BC and DBC were evaluated via a biodegradation experiment involving marine heterotrophic prokaryotes and fluorescence quenching experiments with polycyclic aromatic hydrocarbons (PAHs).

In the bay of Marseille, the mean concentration of DBC was 15.0 ± 5.1 μg C L-¹, with values of concentrations near shipping lanes, reflecting the influence of maritime traffic. In the Van Uc estuary, the mean concentration of DBC was 27.9 ± 12.7 μg C L-¹, and was highest in November, after the rainy season. Several local sources were identified, and DBC concentrations decreased from the river towards the estuary, reflecting the impact of phototransformation during transport to the ocean. In the Red River, DBC concentrations ranged from 29.0 ± 10.2 μg C L-¹ in March to 65.6 ± 12.4 μg C L-¹ in September. The decreasing CBD concentrations from Hanoi city towards the estuary in June were consistent with the majority of the river's input to the estuary. Conversely, the increasing concentrations of BCD towards the estuary in March and September appeared to be attributable to groundwater intrusion phenomena around Hanoi, diluting the BCD upstream in the dry season, and to the release of larger quantities of BCD washed out by the rains and transported in patches along the river in September. We have estimated that the Red River delta is responsible for around 0.14 % of the global flow of DBC to the ocean.

The study of the optical properties of DOM_BC led to the proposal of a fluorescence index, COX, which is suitable for detecting combustion products in the marine environment. The biodegradation experiment showed a decrease in DBC of 27 to 45 % in 3 months, depending on the origin of the BC, accompanied by a decrease in the DOM_BC content (DOC, PAHs, FDOM). The bioavailability of DBC was influenced by the origin and oxidation of the BC and the dynamics of the prokaryotic communities. The partition coefficients between DOM_BC and PAHs (phenanthrene and benzo[a]pyrene), measured by fluorescence quenching, were 18 and 265 × 10³ L kg C-¹, i.e. higher than those for natural DOM.

This thesis work has made it possible to confirm DBC as a non-refractory component of coastal and oceanic DOM. Further molecular analyses, such as FT-ICR-MS, will clarify the sources and increase our knowledge of how BCD is modified by biotic and abiotic processes.

 

Zoom link : https://univ-amu-fr.zoom.us/j/81164757165?pwd=Roq3hNGMEaWg4xzbxdIskVbcdci51Z.1

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